Same words, different worlds: Conceptual consistency in systems neuroscience

Organizers

Mattia Chini | University Medical Center Hamburg-Eppendorf, Germany
Irina Pochinok | University Medical Center Hamburg-Eppendorf, Germany
Simon Musall | Forschungszentrum Jülich, Germany

Abstract

This workshop brings together philosophers, experimentalists, theorists, and engineers to tackle an important but often overlooked source of variability across studies in systems neuroscience: conceptual and methodological drift. While there are growing efforts to establish standardized preprocessing or statistical modeling approaches across labs, much less attention is paid to the impact of inconsistent use of core concepts when researchers use the same words to mean slightly different things. Concepts like “causality”, “connectivity”, or “representation”, are central to how we formulate questions, choose experimental and analytical tools, and interpret results. Yet these terms often carry different meanings across subfields, especially in an inherently interdisciplinary field, such as systems neuroscience. This heterogeneity carries a high risk of conceptual fragmentation, leading to distinct analytical strategies and ultimately to incompatible results. To promote scientific integrity and reproducibility, it is therefore crucial to identify and understand the key conceptual differences that shape how scientific conclusions are drawn. The workshop directly tackles this challenge in its full complexity. Speakers will examine how abstract concepts such as causality or modularity are conceptually defined, and how these definitions can be operationalized. The workshop will also cover seemingly concrete phenomena, such as oscillations, sharp wave-ripples and intrinsic timescales, to examine how even well-established phenomena are shaped by conceptual assumptions and methodological decisions. Talks will range from theory to experimental practice, including the logic behind analysis standardization tools and the epistemology of mechanistic explanations. The format and topic of the workshop are well-suited to promote active participation and open debate. By design, the workshop aims to surface controversial issues and encourage discussing competing approaches and implicit assumptions.

Schedule (CEST)

Monday, Sept 29

14:00

Mattia Chini, Irina Pochinok, Simon Musall | University Medical Center Hamburg-Eppendorf / Forschungszentrum Jülich, Germany
Introductory remarks

14:10

Natalie Schaworonkow | Ernst Strüngmann Institute for Neuroscience, Frankfurt am Main, Germany
How (not) to analyze an LP/EEG oscillation: Methodological considerations for spectral and time series analysis of electrophysiological data

14:45

Andrea Navas-Olive | Institute of Science and Technology Austria (ISTA), Austria and Instituto Cajal, Madrid, Spain
What is a ripple? Defining and detecting sharp-wave ripple events

15:25

Roxana Zeraati | Max Planck Institute for Biological Cybernetics, Tübingen, Germany
What is a neural timescale anyway: From data to models

16:00

Coffee break

16:30

Peter Petersen | University of Copenhagen, Denmark
Standardizing cell-type classification with CellExplorer

17:10

Alessio Buccino | Allen Institute for Neural Dynamics, USA
Standardizing electrophysiology analysis with SpikeInterface

17:50

Michael Denker | Forschungszentrum Jülich, Germany
Concepts for reproducibility and FAIR sharing of analysis outcomes in electrophysiology

Tuesday, Sept 30

8:30

Mattia Chini, Irina Pochinok, Simon Musall | University Medical Center Hamburg-Eppendorf / Forschungszentrum Jülich, Germany
Introductory remarks

8:40

Daniele Marinazzo | Ghent University, Belgium
Causality, mechanisms, behaviors: How (not) to get lost between map and territory in neuroscience research

9:20

Beate Krickel | Technical University Berlin, Germany
Mechanism, computation, representation: What do these concepts mean in neuroscience and how do they relate?

10:00

Coffee break

10:30

Kayson Fakhar | University of Cambridge, United Kingdom
Causal pathways in brain networks go beyond their underlying structure

11:10

Lauren Ross | University of California, Irvine, USA
Causation in neuroscience: Efforts towards conceptual clarity

11:50

Irina Pochinok | University Medical Center Hamburg-Eppendorf, Germany
CON²PHYS: A community study on CONceptual CONsistency in electroPHYSiology